The core CC integrates usage of command blocks as peripherals, with the ability to set, reset, and run server commands.
Does it? I didn't see anything about it on the Wiki and I just tested trying to wrap a command block as a peripheral and it returned nil. Unless, maybe I misunderstood what you were saying.
Rednet range limits can be effectively removed in config, if that's really desired (I don't see why it would be, though…if an OP is on the server they can just use server commands directly, the point of the command blocks would be to have automated effects, there is no real need for long range messaging if they are set in the chunk loading range of the players that would be triggering/receiving effects).
For almost all of the computers the normal range may be desired. However, there may be times when having special computers with no range limit would be useful. For example, having a a set of utilities that can be easily accessed by everyone on the server from anywhere – such as software repositories, help pages, and other content being made available. Shouldn't people have the freedom to decide how they want their own servers to be used by the players?
Encasing these in bedrock accomplishes the desired access limitation.
The use limitation mentioned was more of a general property this kind of computer should have. Yes, there are ways of limiting access other players can have to the computers already available.
As mentioned, there is also an OP panel peripheral with the additional abilities (it's been used to create things like "holodecks" and such).
There are a lot of peripherals that can do a lot of interesting things. In theory they can fill every need you have. In practice, though, people usually only have what's available in the mod-pack the server is based on, which makes me not want to become overly dependent on them.
Ok, to help people see why these computers would be such a great idea, let me present a hypothetical server setup. Let's say someone wanted to set up a unique server based around space exploration. The players on the server will be building their own "ships" with various computers. An OP computer should be able to easily communicate between all of these ships to keep track of their "movement" and "interactions." Of course, they wouldn't really be doing anything, since they are merely rooms set up in ship-like configurations, but the OP computer can keep track of their data and stats and provide a different way to play MineCraft. This OP computer can also "warp" players down to "planet surfaces" within "teleportation" range where resource gathering and adventures can be carried out. Lua scripts can be written to use server commands to generate alien landscapes and generate a database of planet information.
The point is, just because it might not be immediately apparent why such a computer might be useful, it doesn't mean that it wouldn't be useful. It provides an interface for being able to do whole new creative things that's entirely unique to your server. Since this is an item that can only be used by OPs it, of course, does not need to be used if one so chooses. But if it is made available, I'm sure we'd be seeing plenty of amazing things being done with them.
Edit:
A little searching around has led me to find that Command Blocks can be enabled in ComputerCraft's config file.